pilA_2 protein (Legionella erythra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

pilA_2

Type IV pilus assembly protein PilA; Belongs to the N-Me-Phe pilin family. (136 aa)

Predicted Functional Partners:

pilQ

0.661

pilA_1

0.514

pilE_1

0.511

pilE_2

0.486

pilM

0.453

Lery_1800

0.445

Lery_2075

0.444

Lery_1110

0.438

pilA_3

0.422

pilN

0.412

Your Current Organism:

Legionella erythra

NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lery_1110	Lery_2075	Lery_1110	Lery_2075	Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type IV pilus biogenesis protein PilO.	0.653
Lery_1110	pilA_2	Lery_1110	Lery_0368	Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type IV pilus assembly protein PilA; Belongs to the N-Me-Phe pilin family.	0.438
Lery_1110	pilA_3	Lery_1110	Lery_0369	Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type IV pilus assembly protein PilA; Belongs to the N-Me-Phe pilin family.	0.426
Lery_1110	pilE_1	Lery_1110	Lery_2060	Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type-IV pilin.	0.656
Lery_1110	pilE_2	Lery_1110	Lery_2280	Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Tfp pilus assembly protein, major type IV pilin class A.	0.443
Lery_1110	pilM	Lery_1110	Lery_2077	Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Tfp pilus assembly protein, ATPase PilM.	0.776
Lery_1110	pilN	Lery_1110	Lery_2076	Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Tfp pilus assembly protein PilN.	0.599
Lery_1110	pilQ	Lery_1110	Lery_2073	Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	Type IV pilus (Tfp) assembly protein PilQ.	0.693
Lery_1800	Lery_2075	Lery_1800	Lery_2075	Type IV pre-pilin.	Type IV pilus biogenesis protein PilO.	0.848
Lery_1800	pilA_1	Lery_1800	Lery_0367	Type IV pre-pilin.	Type IV pilus assembly protein PilA; Belongs to the N-Me-Phe pilin family.	0.558
Lery_1800	pilA_2	Lery_1800	Lery_0368	Type IV pre-pilin.	Type IV pilus assembly protein PilA; Belongs to the N-Me-Phe pilin family.	0.445
Lery_1800	pilA_3	Lery_1800	Lery_0369	Type IV pre-pilin.	Type IV pilus assembly protein PilA; Belongs to the N-Me-Phe pilin family.	0.435
Lery_1800	pilE_1	Lery_1800	Lery_2060	Type IV pre-pilin.	Type-IV pilin.	0.945
Lery_1800	pilE_2	Lery_1800	Lery_2280	Type IV pre-pilin.	Tfp pilus assembly protein, major type IV pilin class A.	0.440
Lery_1800	pilM	Lery_1800	Lery_2077	Type IV pre-pilin.	Tfp pilus assembly protein, ATPase PilM.	0.771
Lery_1800	pilN	Lery_1800	Lery_2076	Type IV pre-pilin.	Tfp pilus assembly protein PilN.	0.839
Lery_1800	pilQ	Lery_1800	Lery_2073	Type IV pre-pilin.	Type IV pilus (Tfp) assembly protein PilQ.	0.770
Lery_2075	Lery_1110	Lery_2075	Lery_1110	Type IV pilus biogenesis protein PilO.	Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.	0.653
Lery_2075	Lery_1800	Lery_2075	Lery_1800	Type IV pilus biogenesis protein PilO.	Type IV pre-pilin.	0.848
Lery_2075	pilA_1	Lery_2075	Lery_0367	Type IV pilus biogenesis protein PilO.	Type IV pilus assembly protein PilA; Belongs to the N-Me-Phe pilin family.	0.575