motA2 protein (Legionella erythra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

motA2

Flagellar motor protein MotA. (292 aa)

Predicted Functional Partners:

motB_2

0.999

motB_1

0.987

Lery_0656

0.970

Lery_0969

0.970

Lery_2896

0.970

fliF

0.932

flgH

0.928

flgG

0.919

flgC

0.906

fliG

0.899

Your Current Organism:

Legionella erythra

NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lery_0656	Lery_0969	Lery_0656	Lery_0969	GGDEF domain-containing sensory box protein.	GGDEF domain-containing sensory box protein.	0.995
Lery_0656	Lery_2896	Lery_0656	Lery_2896	GGDEF domain-containing sensory box protein.	Regulatory protein (GGDEF and EAL domains).	0.997
Lery_0656	flgC	Lery_0656	Lery_2346	GGDEF domain-containing sensory box protein.	Flagellar basal body rod protein FlgC.	0.956
Lery_0656	flgG	Lery_0656	Lery_2350	GGDEF domain-containing sensory box protein.	Flagellar basal body rod protein FlgG; Belongs to the flagella basal body rod proteins family.	0.908
Lery_0656	flgH	Lery_0656	Lery_2351	GGDEF domain-containing sensory box protein.	Flagellar basal body L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.775
Lery_0656	fliF	Lery_0656	Lery_2122	GGDEF domain-containing sensory box protein.	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.961
Lery_0656	fliG	Lery_0656	Lery_2121	GGDEF domain-containing sensory box protein.	Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.	0.978
Lery_0656	motA2	Lery_0656	Lery_0388	GGDEF domain-containing sensory box protein.	Flagellar motor protein MotA.	0.970
Lery_0656	motB_1	Lery_0656	Lery_0330	GGDEF domain-containing sensory box protein.	Flagellar motor protein MotD.	0.767
Lery_0656	motB_2	Lery_0656	Lery_0389	GGDEF domain-containing sensory box protein.	Flagellar motor protein MotB.	0.767
Lery_0969	Lery_0656	Lery_0969	Lery_0656	GGDEF domain-containing sensory box protein.	GGDEF domain-containing sensory box protein.	0.995
Lery_0969	Lery_2896	Lery_0969	Lery_2896	GGDEF domain-containing sensory box protein.	Regulatory protein (GGDEF and EAL domains).	0.995
Lery_0969	flgC	Lery_0969	Lery_2346	GGDEF domain-containing sensory box protein.	Flagellar basal body rod protein FlgC.	0.956
Lery_0969	flgG	Lery_0969	Lery_2350	GGDEF domain-containing sensory box protein.	Flagellar basal body rod protein FlgG; Belongs to the flagella basal body rod proteins family.	0.908
Lery_0969	flgH	Lery_0969	Lery_2351	GGDEF domain-containing sensory box protein.	Flagellar basal body L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.	0.775
Lery_0969	fliF	Lery_0969	Lery_2122	GGDEF domain-containing sensory box protein.	Flagellar MS-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.961
Lery_0969	fliG	Lery_0969	Lery_2121	GGDEF domain-containing sensory box protein.	Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.	0.978
Lery_0969	motA2	Lery_0969	Lery_0388	GGDEF domain-containing sensory box protein.	Flagellar motor protein MotA.	0.970
Lery_0969	motB_1	Lery_0969	Lery_0330	GGDEF domain-containing sensory box protein.	Flagellar motor protein MotD.	0.767
Lery_0969	motB_2	Lery_0969	Lery_0389	GGDEF domain-containing sensory box protein.	Flagellar motor protein MotB.	0.767