Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lery_0403ATP transporter ATP- binding protein. (250 aa)    
Predicted Functional Partners:
sufD
Component of SufBCD complex.
 
 0.999
Lery_0404
Cysteine desulfurase.
 0.999
sufS
Selenocysteine lyase, PLP-dependent; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
 0.997
nifU_1
NifU-like protein.
 
 
 0.988
Lery_0399
Metal-sulfur cluster biosynthetic enzyme.
 
  
 0.963
Lery_0405
Rrf2 family transporter protein.
     
 0.889
poxA
lysyl-tRNA synthetase.
       0.866
nifU_2
NifU-like protein.
  
 
 0.861
sufA
Fe-S cluster assembly protein; Belongs to the HesB/IscA family.
  
 
 0.792
iscS
Cysteine desulfurase NifS.
  
 
 0.669
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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