Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lery_0476Protein IcmL (DotI). (212 aa)    
Predicted Functional Partners:
Lery_0475
IcmK protein.
 
   
 0.975
Lery_0474
Protein IcmE (DotG).
 
   
 0.970
Lery_0469
Protein IcmB (DotO).
 
   
 0.928
Lery_0480
Protein IcmO (DotL).
 
   
 0.920
icmP
IcmP protein.
 
   
 0.919
icmM/dotJ
Component of the Dot/Icm secretion system, predicted inner membrane protein.
     
 0.891
Lery_0473
Protein IcmG (DotF).
     
 0.873
Lery_0472
IcmC (DotE).
     
 0.863
icmD
Protein IcmD (DotP).
     
 0.837
dotC
Defect in organelle trafficking lipoprotein DotC.
  
   
 0.822
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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