Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lery_0560Hypothetical protein. (418 aa)    
Predicted Functional Partners:
Lery_0559
Hypothetical protein.
       0.553
amiB
N-acetylmuramoyl-L-alanine amidase.
     
 0.546
enhA_2
Enhanced entry protein EnhA.
 
     0.525
Lery_1126
Enhanced entry protein EnhA.
 
     0.501
dotC
Defect in organelle trafficking lipoprotein DotC.
  
  
  0.491
lptC
Lipopolysaccharide export system protein LptC.
  
     0.471
Lery_0474
Protein IcmE (DotG).
  
     0.420
Lery_0616
DotA.
  
     0.418
dacB
D-alanyl-D-alanine carboxypeptidase.
  
  
  0.410
Lery_1752
Membrane protein.
  
     0.405
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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