Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lery_0588Tryptophan-rich sensory protein. (189 aa)    
Predicted Functional Partners:
yajR_1
Transporter, major facilitator family.
       0.778
Lery_0803
Deoxyribodipyrimidine photolyase phrB; Belongs to the DNA photolyase family.
 
  
 0.760
Lery_0396
NAD-dependent epimerase/dehydratase.
       0.470
Lery_2831
Toxin secretion ABC transporter ATP-binding protein.
 
     0.462
Lery_2829
Outer membrane component of multidrug efflux pump.
 
     0.457
Lery_2832
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.445
atpH
ATP synthase F1 subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
   0.421
Lery_2830
Putative membrane fusion protein.
 
     0.419
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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