STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dotDLipoprotein DotD. (160 aa)    
Predicted Functional Partners:
Lery_0474
Protein IcmE (DotG).
    
 
 0.982
dotC
Defect in organelle trafficking lipoprotein DotC.
   
 
 0.964
Lery_0475
IcmK protein.
    
 
 0.787
Lery_0473
Protein IcmG (DotF).
    
 
 0.786
Lery_0198
Hypothetical protein.
    
   0.749
lphA
LphA (DotK).
    
   0.749
Lery_1522
Outer membrane protein, OmpA family protein.
    
   0.749
Lery_2648
Neurogenic locus notch like protein precursor.
    
   0.749
amiB
N-acetylmuramoyl-L-alanine amidase.
   
 
 0.654
mltD
Membrane bound lytic murein transglycosylase D.
   
 
 0.654
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.