Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lery_0648Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein. (369 aa)    
Predicted Functional Partners:
Lery_1544
Amino acid (glutamine) ABC transporter permease.
    
 0.572
Lery_1543
Amino acid (glutamine) ABC transporter ATP binding protein.
     
 0.544
potD
Spermidine/putrescine-binding periplasmic protein precursor potD (SPBP); Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
     
 0.541
Lery_0647
Hypothetical protein.
       0.522
Lery_0649
High-affinity nickel-transport protein; Belongs to the NiCoT transporter (TC 2.A.52) family.
       0.487
Lery_1668
Polyketide synthase module.
   
 0.486
Lery_0650
Hypothetical protein.
       0.475
Lery_0651
AIR carboxylase.
       0.475
Lery_0652
Hypothetical protein.
       0.475
Lery_0653
Hypothetical protein.
       0.475
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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