Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Lery_0704 | pilT | Lery_0704 | Lery_0705 | Pyridoxal-5'-phosphate dependent enzyme family transporter protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. | Twitching motility protein PilT. | 0.590 |
| Lery_0704 | proC | Lery_0704 | Lery_0703 | Pyridoxal-5'-phosphate dependent enzyme family transporter protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.889 |
| Lery_1110 | comA | Lery_1110 | Lery_0725 | Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | DNA uptake/competence protein ComA. | 0.793 |
| Lery_1110 | lspE | Lery_1110 | Lery_1844 | Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. | 0.885 |
| Lery_1110 | lspF | Lery_1110 | Lery_1153 | Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | Type II secretory pathway protein LspF. | 0.875 |
| Lery_1110 | pilB | Lery_1110 | Lery_1112 | Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | Pilus assembly protein PilB. | 0.974 |
| Lery_1110 | pilC | Lery_1110 | Lery_1111 | Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | Pilus assembly protein PilC. | 0.972 |
| Lery_1110 | pilM | Lery_1110 | Lery_2077 | Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | Tfp pilus assembly protein, ATPase PilM. | 0.686 |
| Lery_1110 | pilQ | Lery_1110 | Lery_2073 | Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | Type IV pilus (Tfp) assembly protein PilQ. | 0.579 |
| Lery_1110 | pilT | Lery_1110 | Lery_0705 | Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | Twitching motility protein PilT. | 0.809 |
| comA | Lery_1110 | Lery_0725 | Lery_1110 | DNA uptake/competence protein ComA. | Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.793 |
| comA | lspE | Lery_0725 | Lery_1844 | DNA uptake/competence protein ComA. | Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. | 0.593 |
| comA | lspF | Lery_0725 | Lery_1153 | DNA uptake/competence protein ComA. | Type II secretory pathway protein LspF. | 0.756 |
| comA | pilB | Lery_0725 | Lery_1112 | DNA uptake/competence protein ComA. | Pilus assembly protein PilB. | 0.593 |
| comA | pilC | Lery_0725 | Lery_1111 | DNA uptake/competence protein ComA. | Pilus assembly protein PilC. | 0.784 |
| comA | pilM | Lery_0725 | Lery_2077 | DNA uptake/competence protein ComA. | Tfp pilus assembly protein, ATPase PilM. | 0.482 |
| comA | pilT | Lery_0725 | Lery_0705 | DNA uptake/competence protein ComA. | Twitching motility protein PilT. | 0.493 |
| comA | proC | Lery_0725 | Lery_0703 | DNA uptake/competence protein ComA. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.493 |
| lspE | Lery_1110 | Lery_1844 | Lery_1110 | Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. | Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.885 |
| lspE | comA | Lery_1844 | Lery_0725 | Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. | DNA uptake/competence protein ComA. | 0.593 |
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