yfhG protein (Legionella erythra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

yfhG

Lipoprotein. (589 aa)

Predicted Functional Partners:

Lery_1949

0.633

glpD

0.523

Lery_0734

0.507

Lery_0735

0.491

birA

0.470

Your Current Organism:

Legionella erythra

NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lery_0734	Lery_0735	Lery_0734	Lery_0735	Hypothetical protein.	Protein with a bacterial immunoglobulin-like domain protein.	0.749
Lery_0734	yfhG	Lery_0734	Lery_0733	Hypothetical protein.	Lipoprotein.	0.507
Lery_0735	Lery_0734	Lery_0735	Lery_0734	Protein with a bacterial immunoglobulin-like domain protein.	Hypothetical protein.	0.749
Lery_0735	yfhG	Lery_0735	Lery_0733	Protein with a bacterial immunoglobulin-like domain protein.	Lipoprotein.	0.491
Lery_1949	yfhG	Lery_1949	Lery_0733	Hypothetical protein.	Lipoprotein.	0.633
birA	yfhG	Lery_2931	Lery_0733	biotin-[acetylCoA carboxylase] holoenzyme synthetase and biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.	Lipoprotein.	0.470
glpD	yfhG	Lery_1785	Lery_0733	Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.	Lipoprotein.	0.523
yfhG	Lery_0734	Lery_0733	Lery_0734	Lipoprotein.	Hypothetical protein.	0.507
yfhG	Lery_0735	Lery_0733	Lery_0735	Lipoprotein.	Protein with a bacterial immunoglobulin-like domain protein.	0.491
yfhG	Lery_1949	Lery_0733	Lery_1949	Lipoprotein.	Hypothetical protein.	0.633
yfhG	birA	Lery_0733	Lery_2931	Lipoprotein.	biotin-[acetylCoA carboxylase] holoenzyme synthetase and biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.	0.470
yfhG	glpD	Lery_0733	Lery_1785	Lipoprotein.	Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.	0.523