Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lvhB3_1Type IV secretion system protein VirB3. (94 aa)    
Predicted Functional Partners:
lvhB_2
Vir protein.
  
 
 0.944
Lery_0858
Hypothetical protein.
  
 
 0.923
Lery_0855
Hypothetical protein.
  
 
 0.921
Lery_0856
Hypothetical protein.
  
 
 0.919
Lery_1271
Hypothetical protein.
  
 
 0.916
Lery_1269
Hypothetical protein.
  
 
 0.859
Lery_1272
Hypothetical protein.
  
 
 0.855
lvhB_3
Vir protein B5.
   
   0.847
Lery_0857
Hypothetical protein.
  
  
 0.827
Lery_0474
Protein IcmE (DotG).
  
 
 0.798
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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