STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lery_0879Short chain dehydrogenase/reductase family oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (251 aa)    
Predicted Functional Partners:
Lery_0878
Polyketide synthase; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 0.971
Lery_1668
Polyketide synthase module.
  
 
 0.824
Lery_0877
Fumarylacetoacetate (FAA) hydrolase family protein.
  
 
  0.732
Lery_1004
YcaC related amidohydrolase.
    
  0.582
korA
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
   
 
  0.568
bioA
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.562
Lery_1437
enoyl-ACP reductase.
  
  
  0.561
Lery_0089
Aminotransferase class-III.
    
 0.519
Lery_0435
Phenylalanine-4-hydroxylase.
    
  0.488
Lery_0519
Oxydoreductase.
  
  
  0.477
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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