Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lery_0942Bacterioferritin (cytochrome b1); Belongs to the Dps family. (185 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.858
Lery_1379
Transmembrane protein.
  
    0.742
yjbJ_1
Stress response protein; Belongs to the UPF0337 (CsbD) family.
  
    0.637
yjbJ_2
Stress response protein; Belongs to the UPF0337 (CsbD) family.
  
    0.637
Lery_0573
Sensor histidine kinase.
   
    0.614
Lery_2270
Sensor histidine kinase.
   
    0.614
cysC
Elongation factor Tu (EF-Tu); Catalyzes the synthesis of activated sulfate. Belongs to the APS kinase family.
  
   
 0.586
Lery_2675
Protein with a Dodecin-like topology.
   
    0.531
Lery_1217
Hypothetical protein.
 
    0.479
Lery_0941
Hypothetical protein.
       0.410
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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