Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
lssD_1Secretion system protein D. (481 aa)    
Predicted Functional Partners:
Lery_0951
Toxin secretion ATP binding protein.
 
 0.966
Lery_0950
Toxin secretion ATP binding protein.
 
 0.964
Lery_2275
Agglutination protein.
 
 0.918
Lery_0953
Hypothetical protein.
 
     0.889
Lery_1117
Toxin secretion ATP binding protein.
  
 0.889
Lery_1234
Toxin secretion ATP binding protein.
 
  
 0.802
rtxA-2
Structural toxin protein RtxA.
 
 
 0.790
rtxA2
Structural toxin protein RtxA.
  
     0.737
Lery_2276
Periplasmic protein.
 
   
 0.731
Lery_2336
Hypothetical protein.
 
     0.700
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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