Lery_0965 protein (Legionella erythra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Lery_0965

Ion channel. (217 aa)

Predicted Functional Partners:

Lery_0412

0.674

ribA

0.601

Lery_0964

0.570

Lery_2728

0.537

cyaA_3

0.487

Lery_0473

0.432

Lery_0475

0.430

Lery_0432

0.428

dotD

0.422

dotC

0.422

Your Current Organism:

Legionella erythra

NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lery_0412	Lery_0432	Lery_0412	Lery_0432	Regulatory protein (GGDEF and EAL domains).	GGDEF domain-containing sensory box protein.	0.983
Lery_0412	Lery_0965	Lery_0412	Lery_0965	Regulatory protein (GGDEF and EAL domains).	Ion channel.	0.674
Lery_0412	Lery_2728	Lery_0412	Lery_2728	Regulatory protein (GGDEF and EAL domains).	Guanylate cyclase.	0.974
Lery_0412	cyaA_3	Lery_0412	Lery_1783	Regulatory protein (GGDEF and EAL domains).	Fused adenylate cyclase/two component hybrid sensor/regulator.	0.973
Lery_0412	ribA	Lery_0412	Lery_0985	Regulatory protein (GGDEF and EAL domains).	Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	0.909
Lery_0432	Lery_0412	Lery_0432	Lery_0412	GGDEF domain-containing sensory box protein.	Regulatory protein (GGDEF and EAL domains).	0.983
Lery_0432	Lery_0965	Lery_0432	Lery_0965	GGDEF domain-containing sensory box protein.	Ion channel.	0.428
Lery_0432	Lery_2728	Lery_0432	Lery_2728	GGDEF domain-containing sensory box protein.	Guanylate cyclase.	0.967
Lery_0432	cyaA_3	Lery_0432	Lery_1783	GGDEF domain-containing sensory box protein.	Fused adenylate cyclase/two component hybrid sensor/regulator.	0.967
Lery_0432	ribA	Lery_0432	Lery_0985	GGDEF domain-containing sensory box protein.	Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	0.892
Lery_0473	Lery_0475	Lery_0473	Lery_0475	Protein IcmG (DotF).	IcmK protein.	0.972
Lery_0473	Lery_0965	Lery_0473	Lery_0965	Protein IcmG (DotF).	Ion channel.	0.432
Lery_0473	dotC	Lery_0473	Lery_0614	Protein IcmG (DotF).	Defect in organelle trafficking lipoprotein DotC.	0.837
Lery_0473	dotD	Lery_0473	Lery_0613	Protein IcmG (DotF).	Lipoprotein DotD.	0.833
Lery_0475	Lery_0473	Lery_0475	Lery_0473	IcmK protein.	Protein IcmG (DotF).	0.972
Lery_0475	Lery_0965	Lery_0475	Lery_0965	IcmK protein.	Ion channel.	0.430
Lery_0475	dotC	Lery_0475	Lery_0614	IcmK protein.	Defect in organelle trafficking lipoprotein DotC.	0.961
Lery_0475	dotD	Lery_0475	Lery_0613	IcmK protein.	Lipoprotein DotD.	0.836
Lery_0964	Lery_0965	Lery_0964	Lery_0965	Hypothetical protein.	Ion channel.	0.570
Lery_0965	Lery_0412	Lery_0965	Lery_0412	Ion channel.	Regulatory protein (GGDEF and EAL domains).	0.674