Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Lery_1097Photosystem I assembly protein Ycf3. (369 aa)    
Predicted Functional Partners:
bcp
Acetylpolyamine aminohydrolase.
  
 
  0.872
Lery_1256
Glycosyltransferase, family 2.
  
 0.862
yjeA
Endo-1,4-beta-xylanase.
  
 
 0.783
Lery_2901
Glycosyltransferase.
  
 
  0.782
qseC_2
Two component sensor kinase.
  
 
  0.780
Lery_0412
Regulatory protein (GGDEF and EAL domains).
 
  
 0.776
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
   
  0.771
Lery_1827
L-gulono-gamma-lactone oxidase.
  
     0.750
Lery_0035
Major facilitator family transporter.
  
     0.749
Lery_2318
Putative N-hydroxyarylamine O-acetyltransferase.
  
     0.746
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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