STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lssALegionella secretion system protein A. (233 aa)    
Predicted Functional Partners:
dacA
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
    
  0.752
dacB
D-alanyl-D-alanine carboxypeptidase.
    
  0.592
mrdA
Penicillin binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
     
 0.588
Lery_1119
Type I secretion system LssZ.
       0.574
lssY
Secretion system protein Y.
 
     0.532
ftsI
Peptidoglycan synthetase FtsI precursor; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.
     
 0.520
Lery_1117
Toxin secretion ATP binding protein.
       0.484
lssD_2
Secretion system protein D.
     
 0.481
Lery_1608
Hypothetical protein.
  
     0.463
ala
D-alanine-aminotransferase.
  
  
 0.448
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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