Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lspKType II secretory pathway protein LspK. (312 aa)    
Predicted Functional Partners:
lspJ
Type II secretory pathway protein LspJ.
 
 
 0.999
lspI
Type II secretory pathway protein LspI.
 
 
 0.999
lspG
Type II secretory pathway protein LspG.
 
 
 0.997
Lery_1151
General secretion pathway protein LspH.
 
 
 0.994
lspF
Type II secretory pathway protein LspF.
 
   
 0.980
lspD
Type II protein secretion LspD.
 
   
 0.965
Lery_0309
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.896
lspE
Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.888
yghD
Putative general secretion pathway protein YghD.
 
  
 0.836
pilE_2
Tfp pilus assembly protein, major type IV pilin class A.
 
 
 0.759
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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