pilZ_2 protein (Legionella erythra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pilZ_2

Type 4 fimbrial biogenesis protein PilZ. (114 aa)

Predicted Functional Partners:

stuC

0.978

Lery_0656

0.975

Lery_0969

0.975

Lery_2896

0.975

Lery_0432

0.972

Lery_0948

0.972

Lery_2277

0.972

Lery_0578

0.864

pilB

0.857

lspE

0.833

Your Current Organism:

Legionella erythra

NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lery_0432	Lery_0578	Lery_0432	Lery_0578	GGDEF domain-containing sensory box protein.	Regulatory protein (GGDEF domain).	0.976
Lery_0432	Lery_0656	Lery_0432	Lery_0656	GGDEF domain-containing sensory box protein.	GGDEF domain-containing sensory box protein.	0.996
Lery_0432	Lery_0948	Lery_0432	Lery_0948	GGDEF domain-containing sensory box protein.	Inner membrane protein/sensory box protein LssE.	0.993
Lery_0432	Lery_0969	Lery_0432	Lery_0969	GGDEF domain-containing sensory box protein.	GGDEF domain-containing sensory box protein.	0.997
Lery_0432	Lery_2277	Lery_0432	Lery_2277	GGDEF domain-containing sensory box protein.	Two component histidine kinase.	0.962
Lery_0432	Lery_2896	Lery_0432	Lery_2896	GGDEF domain-containing sensory box protein.	Regulatory protein (GGDEF and EAL domains).	0.996
Lery_0432	lspE	Lery_0432	Lery_1844	GGDEF domain-containing sensory box protein.	Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.	0.531
Lery_0432	pilB	Lery_0432	Lery_1112	GGDEF domain-containing sensory box protein.	Pilus assembly protein PilB.	0.531
Lery_0432	pilZ_2	Lery_0432	Lery_1196	GGDEF domain-containing sensory box protein.	Type 4 fimbrial biogenesis protein PilZ.	0.972
Lery_0432	stuC	Lery_0432	Lery_1166	GGDEF domain-containing sensory box protein.	Sensor histidine kinase.	0.998
Lery_0578	Lery_0432	Lery_0578	Lery_0432	Regulatory protein (GGDEF domain).	GGDEF domain-containing sensory box protein.	0.976
Lery_0578	Lery_0656	Lery_0578	Lery_0656	Regulatory protein (GGDEF domain).	GGDEF domain-containing sensory box protein.	0.973
Lery_0578	Lery_0948	Lery_0578	Lery_0948	Regulatory protein (GGDEF domain).	Inner membrane protein/sensory box protein LssE.	0.981
Lery_0578	Lery_0969	Lery_0578	Lery_0969	Regulatory protein (GGDEF domain).	GGDEF domain-containing sensory box protein.	0.976
Lery_0578	Lery_2277	Lery_0578	Lery_2277	Regulatory protein (GGDEF domain).	Two component histidine kinase.	0.846
Lery_0578	Lery_2896	Lery_0578	Lery_2896	Regulatory protein (GGDEF domain).	Regulatory protein (GGDEF and EAL domains).	0.976
Lery_0578	pilZ_2	Lery_0578	Lery_1196	Regulatory protein (GGDEF domain).	Type 4 fimbrial biogenesis protein PilZ.	0.864
Lery_0578	stuC	Lery_0578	Lery_1166	Regulatory protein (GGDEF domain).	Sensor histidine kinase.	0.976
Lery_0656	Lery_0432	Lery_0656	Lery_0432	GGDEF domain-containing sensory box protein.	GGDEF domain-containing sensory box protein.	0.996
Lery_0656	Lery_0578	Lery_0656	Lery_0578	GGDEF domain-containing sensory box protein.	Regulatory protein (GGDEF domain).	0.973