STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycelPolyprenyl-pyrophosphate binding protein; Belongs to the UPF0312 family. (193 aa)    
Predicted Functional Partners:
Lery_1200
Putative YceI-like family protein; Belongs to the UPF0312 family.
 
     0.952
cybA
Cytochrome b561 transmembrane protein.
 
  
 0.929
Lery_1203
Signal peptide protein.
       0.768
Lery_1204
Hypothetical protein.
       0.768
Lery_1205
Hypothetical protein; Belongs to the UPF0276 family.
       0.768
cybB
Cytochrome b-561 transmembrane protein.
 
  
 0.716
Lery_1206
Silver efflux pump.
       0.632
anmK
anhydro-N-acetylmuramic acid kinase; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.
 
     0.417
Lery_1207
Multidrug resistance protein D.
       0.409
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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