STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lvhB3_2Type IV secretion system protein VirB3. (94 aa)    
Predicted Functional Partners:
lvhB_13
Vir protein.
  
 
 0.959
Lery_1271
Hypothetical protein.
  
 
 0.944
Lery_0856
Hypothetical protein.
  
 
 0.840
lvhB_2
Vir protein.
  
 
 0.828
Lery_2199
Putative conjugative transfer protein TraC.
  
 
 0.828
Lery_2398
Type IV secretory protein VirB4 component.
  
 
 0.828
lvhB_14
Vir protein.
       0.780
Lery_0469
Protein IcmB (DotO).
   
 
 0.777
Lery_1269
Hypothetical protein.
  
  
 0.772
Lery_1270
Hypothetical protein.
  
  
 0.772
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.