Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
qseC_1Two component sensor kinase. (477 aa)    
Predicted Functional Partners:
lrpR
DNA-binding response regulator.
 
 0.985
Lery_0576
Sensory box histidine kinase/response regulator.
 
0.973
Lery_2143
Sensory histidine-kinase / response regulator.
 
0.949
stuC
Sensor histidine kinase.
  
 0.945
Lery_0946
Sensory box histidine kinase/response regulator.
 
0.915
cpxR
Transcriptional regulatory protein CpxR.
 
 0.915
gacS/letS
Transmission sensor LetS.
 
0.903
Lery_1371
Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
 
     0.885
Lery_2464
Response regulator receiver domain protein.
   
 0.860
Lery_0947
Two component response regulator.
 
 0.837
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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