Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
fimVFimV protein. (934 aa)    
Predicted Functional Partners:
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
    0.894
Lery_0576
Sensory box histidine kinase/response regulator.
     
 0.845
Lery_2075
Type IV pilus biogenesis protein PilO.
  
  
 0.811
pilN
Tfp pilus assembly protein PilN.
  
  
 0.794
Lery_2484
LysM domain-containing protein.
  
   
 0.772
pilZ_2
Type 4 fimbrial biogenesis protein PilZ.
  
     0.768
Lery_2074
Type IV pilus biogenesis protein PilP.
  
  
 0.768
pilM
Tfp pilus assembly protein, ATPase PilM.
  
  
 0.768
pilS
Sensor protein PilS.
  
 
   0.727
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
  
  
 0.717
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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