STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fimVFimV protein. (934 aa)    
Predicted Functional Partners:
rpoE
Sigma factor RpoE (sigma 24); Belongs to the sigma-70 factor family. ECF subfamily.
  
 
   0.850
pilN
Tfp pilus assembly protein PilN.
  
    0.815
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
    0.804
Lery_2075
Type IV pilus biogenesis protein PilO.
  
  
 0.797
Lery_2484
LysM domain-containing protein.
  
   
 0.772
Lery_2074
Type IV pilus biogenesis protein PilP.
  
    0.769
pilZ_2
Type 4 fimbrial biogenesis protein PilZ.
  
     0.768
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
  
  
 0.738
pilM
Tfp pilus assembly protein, ATPase PilM.
  
  
 0.737
Lery_2107
Pre-pilin leader sequence (pilV).
  
     0.668
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.