gor protein (Legionella erythra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

gor

Glutathione reductase. (449 aa)

Predicted Functional Partners:

Lery_2467

0.984

gshB

0.916

Lery_1668

0.892

odpB

0.886

Lery_2526

0.879

merA1_1

0.878

Lery_1855

0.867

Lery_1547

0.866

sucA

0.856

sucB

0.844

Your Current Organism:

Legionella erythra

NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lery_1547	Lery_1668	Lery_1547	Lery_1668	Transferase.	Polyketide synthase module.	0.654
Lery_1547	gor	Lery_1547	Lery_1548	Transferase.	Glutathione reductase.	0.866
Lery_1668	Lery_1547	Lery_1668	Lery_1547	Polyketide synthase module.	Transferase.	0.654
Lery_1668	Lery_1855	Lery_1668	Lery_1855	Polyketide synthase module.	Pyruvate dehydrogenase E2 component; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	0.952
Lery_1668	Lery_2467	Lery_1668	Lery_2467	Polyketide synthase module.	2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion.	0.978
Lery_1668	gor	Lery_1668	Lery_1548	Polyketide synthase module.	Glutathione reductase.	0.892
Lery_1668	odpB	Lery_1668	Lery_1071	Polyketide synthase module.	Pyruvate dehydrogenase E1 subunit beta.	0.926
Lery_1668	sucA	Lery_1668	Lery_2547	Polyketide synthase module.	2-oxoglutarate dehydrogenase E1.	0.443
Lery_1668	sucB	Lery_1668	Lery_2546	Polyketide synthase module.	Dihydrolipoamide succinyltransferase subunit E2; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).	0.952
Lery_1855	Lery_1668	Lery_1855	Lery_1668	Pyruvate dehydrogenase E2 component; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	Polyketide synthase module.	0.952
Lery_1855	Lery_2467	Lery_1855	Lery_2467	Pyruvate dehydrogenase E2 component; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion.	0.995
Lery_1855	gor	Lery_1855	Lery_1548	Pyruvate dehydrogenase E2 component; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	Glutathione reductase.	0.867
Lery_1855	merA1_1	Lery_1855	Lery_0797	Pyruvate dehydrogenase E2 component; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	Mercuric reductase.	0.417
Lery_1855	odpB	Lery_1855	Lery_1071	Pyruvate dehydrogenase E2 component; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	Pyruvate dehydrogenase E1 subunit beta.	0.973
Lery_1855	sucA	Lery_1855	Lery_2547	Pyruvate dehydrogenase E2 component; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	2-oxoglutarate dehydrogenase E1.	0.991
Lery_1855	sucB	Lery_1855	Lery_2546	Pyruvate dehydrogenase E2 component; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	Dihydrolipoamide succinyltransferase subunit E2; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).	0.457
Lery_2467	Lery_1668	Lery_2467	Lery_1668	2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion.	Polyketide synthase module.	0.978
Lery_2467	Lery_1855	Lery_2467	Lery_1855	2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion.	Pyruvate dehydrogenase E2 component; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).	0.995
Lery_2467	gor	Lery_2467	Lery_1548	2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion.	Glutathione reductase.	0.984
Lery_2467	merA1_1	Lery_2467	Lery_0797	2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion.	Mercuric reductase.	0.699