Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Lery_0075 | Lery_0671 | IcmL-like protein. | Tubulin-tyrosine ligase family protein. | 0.619 |
Lery_0075 | Lery_0779 | IcmL-like protein. | Hypothetical protein. | 0.760 |
Lery_0075 | Lery_1605 | IcmL-like protein. | Leucine-rich repeat protein substrate of the Dot/Icm secretion system. | 0.556 |
Lery_0075 | Lery_1638 | IcmL-like protein. | Two component response regulator. | 0.443 |
Lery_0075 | Lery_2247 | IcmL-like protein. | Outer membrane efflux protein. | 0.750 |
Lery_0075 | Lery_2382 | IcmL-like protein. | Protein LvrA. | 0.676 |
Lery_0671 | Lery_0075 | Tubulin-tyrosine ligase family protein. | IcmL-like protein. | 0.619 |
Lery_0671 | Lery_0779 | Tubulin-tyrosine ligase family protein. | Hypothetical protein. | 0.619 |
Lery_0671 | Lery_0935 | Tubulin-tyrosine ligase family protein. | Hypothetical protein. | 0.648 |
Lery_0671 | Lery_1605 | Tubulin-tyrosine ligase family protein. | Leucine-rich repeat protein substrate of the Dot/Icm secretion system. | 0.753 |
Lery_0671 | Lery_2247 | Tubulin-tyrosine ligase family protein. | Outer membrane efflux protein. | 0.507 |
Lery_0779 | Lery_0075 | Hypothetical protein. | IcmL-like protein. | 0.760 |
Lery_0779 | Lery_0671 | Hypothetical protein. | Tubulin-tyrosine ligase family protein. | 0.619 |
Lery_0779 | Lery_1576 | Hypothetical protein. | Hypothetical protein. | 0.532 |
Lery_0779 | Lery_1605 | Hypothetical protein. | Leucine-rich repeat protein substrate of the Dot/Icm secretion system. | 0.656 |
Lery_0779 | Lery_1638 | Hypothetical protein. | Two component response regulator. | 0.631 |
Lery_0779 | Lery_2247 | Hypothetical protein. | Outer membrane efflux protein. | 0.768 |
Lery_0779 | Lery_2333 | Hypothetical protein. | Putative asmA protein. | 0.509 |
Lery_0779 | Lery_2382 | Hypothetical protein. | Protein LvrA. | 0.736 |
Lery_0779 | Lery_2468 | Hypothetical protein. | Flagellar hook-length control protein FliK. | 0.512 |
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