Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lery_1606Hypothetical protein. (542 aa)    
Predicted Functional Partners:
Lery_1607
Hypothetical protein.
      0.927
Lery_1608
Hypothetical protein.
       0.773
aacA4
Aminoglycoside N(6')acetyltransferase.
  
     0.757
Lery_1843
Hypothetical protein.
  
     0.746
Lery_2459
Glyoxylase.
  
     0.738
Lery_1609
Ankyrin repeats (3 copies).
       0.668
Lery_2866
N-acetyltransferase GCN5.
  
     0.657
Lery_1669
Haloacid dehalogenase-like hydrolase.
  
     0.600
Lery_1824
Phospholipase C.
  
     0.563
grpB
Glutamate rich protein GrpB.
  
     0.514
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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