Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Lery_1668 | deaD | Lery_1668 | Lery_0452 | Polyketide synthase module. | ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.977 |
| Lery_1668 | htpG | Lery_1668 | Lery_1156 | Polyketide synthase module. | Heat shock protein 90; Molecular chaperone. Has ATPase activity. | 0.742 |
| Lery_1668 | ppiB | Lery_1668 | Lery_1634 | Polyketide synthase module. | Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.984 |
| Lery_1668 | rhlE | Lery_1668 | Lery_2895 | Polyketide synthase module. | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | 0.977 |
| Lery_1668 | rplO | Lery_1668 | Lery_1450 | Polyketide synthase module. | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.978 |
| Lery_1668 | rplQ | Lery_1668 | Lery_1444 | Polyketide synthase module. | 50S ribosomal protein L17. | 0.985 |
| Lery_1668 | rplU | Lery_1668 | Lery_1695 | Polyketide synthase module. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.995 |
| Lery_1668 | rplX | Lery_1668 | Lery_1458 | Polyketide synthase module. | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.981 |
| Lery_1668 | rpsQ | Lery_1668 | Lery_1460 | Polyketide synthase module. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.979 |
| Lery_1668 | sodB | Lery_1668 | Lery_2725 | Polyketide synthase module. | Superoxide dismutase, iron; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.966 |
| deaD | Lery_1668 | Lery_0452 | Lery_1668 | ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | Polyketide synthase module. | 0.977 |
| deaD | htpG | Lery_0452 | Lery_1156 | ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | Heat shock protein 90; Molecular chaperone. Has ATPase activity. | 0.431 |
| deaD | ppiB | Lery_0452 | Lery_1634 | ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.979 |
| deaD | rplO | Lery_0452 | Lery_1450 | ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.932 |
| deaD | rplQ | Lery_0452 | Lery_1444 | ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 50S ribosomal protein L17. | 0.875 |
| deaD | rplU | Lery_0452 | Lery_1695 | ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.852 |
| deaD | rplX | Lery_0452 | Lery_1458 | ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.946 |
| deaD | rpsQ | Lery_0452 | Lery_1460 | ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.629 |
| htpG | Lery_1668 | Lery_1156 | Lery_1668 | Heat shock protein 90; Molecular chaperone. Has ATPase activity. | Polyketide synthase module. | 0.742 |
| htpG | deaD | Lery_1156 | Lery_0452 | Heat shock protein 90; Molecular chaperone. Has ATPase activity. | ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.431 |
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