Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Lery_1650Regulatory protein (GGDEF domain). (140 aa)    
Predicted Functional Partners:
hemA
Glutamyl tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
       0.686
cyoE
Polyprenyltransferase (cytochrome oxidase assembly factor); Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
   
    0.678
stuC
Sensor histidine kinase.
   
 0.668
Lery_2143
Sensory histidine-kinase / response regulator.
  
 0.666
Lery_0656
GGDEF domain-containing sensory box protein.
  
 0.633
Lery_0969
GGDEF domain-containing sensory box protein.
  
 0.633
Lery_2896
Regulatory protein (GGDEF and EAL domains).
  
 0.633
Lery_1651
Transmembrane protein.
       0.554
Lery_0432
GGDEF domain-containing sensory box protein.
  
 0.552
Lery_0749
Regulatory protein (GGDEF, PAS, PAC domains).
  
 0.552
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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