Lery_1654 protein (Legionella erythra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Legionella erythra

NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lery_0736	Lery_1654	Lery_0736	Lery_1654	FtsX-like permease family protein.	ABC transporter ATP binding protein.	0.555
Lery_0736	Lery_2250	Lery_0736	Lery_2250	FtsX-like permease family protein.	ABC transporter permease.	0.574
Lery_0736	lolD	Lery_0736	Lery_2031	FtsX-like permease family protein.	ABC transporter ATP binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.	0.668
Lery_1543	Lery_1654	Lery_1543	Lery_1654	Amino acid (glutamine) ABC transporter ATP binding protein.	ABC transporter ATP binding protein.	0.570
Lery_1543	Lery_2250	Lery_1543	Lery_2250	Amino acid (glutamine) ABC transporter ATP binding protein.	ABC transporter permease.	0.895
Lery_1543	lolD	Lery_1543	Lery_2031	Amino acid (glutamine) ABC transporter ATP binding protein.	ABC transporter ATP binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.	0.550
Lery_1543	rpsK	Lery_1543	Lery_1447	Amino acid (glutamine) ABC transporter ATP binding protein.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.499
Lery_1651	Lery_1652	Lery_1651	Lery_1652	Transmembrane protein.	Membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.674
Lery_1651	Lery_1653	Lery_1651	Lery_1653	Transmembrane protein.	ABC transporter permease.	0.664
Lery_1651	Lery_1654	Lery_1651	Lery_1654	Transmembrane protein.	ABC transporter ATP binding protein.	0.664
Lery_1652	Lery_1651	Lery_1652	Lery_1651	Membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	Transmembrane protein.	0.674
Lery_1652	Lery_1653	Lery_1652	Lery_1653	Membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	ABC transporter permease.	0.914
Lery_1652	Lery_1654	Lery_1652	Lery_1654	Membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	ABC transporter ATP binding protein.	0.885
Lery_1652	Lery_2250	Lery_1652	Lery_2250	Membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	ABC transporter permease.	0.734
Lery_1652	lolD	Lery_1652	Lery_2031	Membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	ABC transporter ATP binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.	0.436
Lery_1653	Lery_1651	Lery_1653	Lery_1651	ABC transporter permease.	Transmembrane protein.	0.664
Lery_1653	Lery_1652	Lery_1653	Lery_1652	ABC transporter permease.	Membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.	0.914
Lery_1653	Lery_1654	Lery_1653	Lery_1654	ABC transporter permease.	ABC transporter ATP binding protein.	0.995
Lery_1653	Lery_2250	Lery_1653	Lery_2250	ABC transporter permease.	ABC transporter permease.	0.567
Lery_1653	lolA	Lery_1653	Lery_2127	ABC transporter permease.	Outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).	0.854