STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lery_1689LicD family protein (phosphorylcholine metabolism). (290 aa)    
Predicted Functional Partners:
Lery_1690
HAD-superfamily hydrolase.
       0.800
cinA_2
Competence damage inducible protein CinA.
       0.784
Lery_1691
Mechanosensitive ion channel MscS.
       0.773
Lery_0353
Choline kinase.
 
  
 0.684
xseB
Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
       0.568
Lery_1688
Geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
       0.568
Lery_0837
O-antigen biosynthesis protein.
    
  0.558
Lery_0006
Choline kinase.
    
 0.533
Lery_1670
Putative aminoglycoside phosphotransferase.
    
 0.533
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.