STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lery_1716Fumarylacetoacetate (FAA) hydrolase family protein. (422 aa)    
Predicted Functional Partners:
hmgA
Homogentisate 1,2-dioxygenase.
 
 
 0.948
Lery_2026
Glutathione S-transferase (maleylacetoacetate isomerase).
 
 0.854
lly
4-hydroxyphenylpyruvate dioxygenase.
 
  
 0.761
Lery_1668
Polyketide synthase module.
  
 0.705
mmsA
Methylmalonate-semialdehyde dehydrogenase [acylating] (MMSDH), oxidoreductase.
   
  0.523
astD
Succinylglutamic-5-semialdehyde dehydrogenase; Catalyzes the NAD-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.
   
  0.523
Lery_1141
Piperidine-6-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
  0.523
Lery_1177
Alcohol dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
  0.523
gabD
Succinate semialdehyde dehydrogenase.
   
  0.523
Lery_0435
Phenylalanine-4-hydroxylase.
 
  
 0.522
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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