Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lery_1725Flavin containing monooxygenae. (434 aa)    
Predicted Functional Partners:
Lery_1726
Hypothetical protein.
       0.828
Lery_2017
Alpha/beta hydrolase.
 
 
 0.734
Lery_1668
Polyketide synthase module.
 
 0.693
bioI
Biotin biosynthesis cytochrome P450.
 
 0.657
fadH
2,4-dienoyl-CoA reductase FadH1.
     
 0.586
Lery_0436
Sterol desaturase-related protein.
 
     0.559
Lery_1332
Lipase LipA (L, pneumophila).
  
 
  0.486
Lery_2272
AraC family transcriptional regulator.
       0.470
Lery_0321
Hypothetical protein.
  
     0.467
xseA
Exonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
       0.467
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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