STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lery_1760Putative ErfK/YbiS/YcfS/YnhG protein. (159 aa)    
Predicted Functional Partners:
gabD
Succinate semialdehyde dehydrogenase.
    
  0.816
amiB
N-acetylmuramoyl-L-alanine amidase.
     
 0.755
dacA
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
    
 0.668
Lery_1761
NAD-glutamate dehydrogenase.
       0.588
lidK
(CDP-alcohol) phosphatidyltransferase; Condenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
    0.496
cybB
Cytochrome b-561 transmembrane protein.
       0.471
Lery_1756
Hypothetical protein.
       0.411
enhB_2
Enhanced entry protein EnhB.
       0.411
Lery_0169
N-acetylmuramoyl-L-alanine amidase.
     
 0.407
Lery_1755
Putative thiol-disulfide isomerase.
       0.405
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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