Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lery_1955Protein kinase domain protein. (735 aa)    
Predicted Functional Partners:
Lery_2143
Sensory histidine-kinase / response regulator.
    
 0.716
Lery_2187
Putative conjugative transfer protein TraI.
  
     0.698
Lery_2192
Putative conjugative transfer protein TrbB.
  
     0.672
Lery_2190
Putative sex pilus assembly and mating pair protein TraG.
  
     0.656
Lery_2433
Hypothetical protein.
  
     0.646
Lery_0935
Hypothetical protein.
  
     0.643
Lery_0934
Hypothetical protein.
  
     0.615
Lery_1862
Ankyrin repeat protein.
  
     0.601
Lery_2434
Hypothetical protein.
  
     0.595
Lery_2195
Putative conjugative transfer protein TrbC.
  
     0.589
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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