Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lery_1962Protein kinase domain protein. (815 aa)    
Predicted Functional Partners:
Lery_1060
Hypothetical protein.
  
     0.752
Lery_2143
Sensory histidine-kinase / response regulator.
    
 0.716
Lery_0406
Acid phosphatase, class B.
  
     0.673
Lery_0311
AAA domain (dynein-related subfamily).
 
   
 0.671
Lery_1933
Thaumatin domain-containing protein.
  
     0.643
gacS/letS
Transmission sensor LetS.
  
 
 0.634
ybiA_1
Swarming motility protein YbiA.
  
     0.604
Lery_1672
Ankyrin repeat-containing protein.
  
     0.560
ybiA_2
Swarming motility protein YbiA.
  
     0.553
Lery_0576
Sensory box histidine kinase/response regulator.
 
  
 0.547
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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