STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lery_1972ABC transporter of LPS O-antigen. (391 aa)    
Predicted Functional Partners:
Lery_1974
Polysaccharide ABC transporter, permease protein.
 
 0.999
Lery_1973
ABC transporter of LPS O-antigen.
 
    
0.834
Lery_1975
Putative methyltransferase.
       0.675
Lery_1976
Hypothetical protein.
  
 
 0.662
Lery_1602
Putative glycosyl transferase.
 
 
 0.647
comF
Competence protein ComF.
   
    0.614
rfbA
Phosphomannose isomerase GDP mannose pyrophosphorylase; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
  
 0.602
Lery_1971
Hypothetical protein.
       0.503
Lery_1969
UDP-glucuronate 5'-epimerase.
 
    0.461
pilF
Fimbrial biogenesis and twitching motility protein PilF.
    
  0.455
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.