STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lery_1982Hypothetical protein. (424 aa)    
Predicted Functional Partners:
Lery_1578
Hypothetical protein.
    
 
 0.837
rfbA
Phosphomannose isomerase GDP mannose pyrophosphorylase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.817
wecB
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
 
 0.723
Lery_1983
Hypothetical protein.
 
     0.708
Lery_1987
NAD dependent epimerase/dehydratase family protein.
 
 
  0.694
Lery_1985
Asparagine synthetase, glutamine-hydrolyzing.
 
     0.665
Lery_1668
Polyketide synthase module.
  
 0.661
Lery_0258
Mannose-1-phosphate guanyltransferase.
  
 0.633
fcf1
dTDP-4-dehydro-6-deoxyglucose reductase.
  
 
  0.630
Lery_1990
Chloramphenicol acetyltransferase.
 
  
  0.630
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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