STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lery_1986Methyltransferase domain protein. (279 aa)    
Predicted Functional Partners:
Lery_1668
Polyketide synthase module.
   
 0.943
Lery_1987
NAD dependent epimerase/dehydratase family protein.
 
     0.770
Lery_1990
Chloramphenicol acetyltransferase.
 
     0.740
ispB_2
Octaprenyl-diphosphate synthase.
   
 0.738
lhgO
L-2-hydroxyglutarate oxidase LhgO.
       0.723
wecB
UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
       0.723
iolG_2
Myo-inositol 2-dehydrogenase.
       0.703
Lery_1992
UDP-glucose/GDP-mannose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
       0.703
Lery_1985
Asparagine synthetase, glutamine-hydrolyzing.
  
    0.673
fcf1
dTDP-4-dehydro-6-deoxyglucose reductase.
       0.668
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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