Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lery_2075Type IV pilus biogenesis protein PilO. (205 aa)    
Predicted Functional Partners:
pilN
Tfp pilus assembly protein PilN.
 
 
 0.999
Lery_2074
Type IV pilus biogenesis protein PilP.
 
  
 0.996
pilM
Tfp pilus assembly protein, ATPase PilM.
 
 
 0.995
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
 
 
 0.994
Lery_2484
LysM domain-containing protein.
  
   0.910
Lery_1800
Type IV pre-pilin.
 
   
 0.848
pilE_1
Type-IV pilin.
 
  
 0.824
pilZ_2
Type 4 fimbrial biogenesis protein PilZ.
  
   
 0.818
fimV
FimV protein.
  
  
 0.811
Lery_2107
Pre-pilin leader sequence (pilV).
 
   
 0.802
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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