Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lery_2087Hypothetical protein. (453 aa)    
Predicted Functional Partners:
ugd
UDP-glucose 6-dehydrogenase.
       0.866
galU
Glucose-1-phosphate uridylyltransferase.
       0.828
etfA
Electron transfer flavoprotein subunit alpha.
       0.680
etfB
Electron transfer flavoprotein subunit beta.
       0.673
Lery_2088
Dolichol monophosphate mannose synthase.
       0.618
ald
Alanine dehydrogenase; Belongs to the AlaDH/PNT family.
       0.565
Lery_2091
Putative membrane-associated phospholipid phosphatase.
       0.470
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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