STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lery_2169ORF6N domain protein. (143 aa)    
Predicted Functional Partners:
argF
Ornithine carbamoyltransferase.
   
 0.721
fadH
2,4-dienoyl-CoA reductase FadH1.
    
 0.683
rfbA
Phosphomannose isomerase GDP mannose pyrophosphorylase; Belongs to the mannose-6-phosphate isomerase type 2 family.
    
  0.676
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.637
Lery_1668
Polyketide synthase module.
   
 
 0.617
lysAC
Bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.578
purD
Phosphoribosylamine-glycine ligase; Belongs to the GARS family.
    
 0.575
gpi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
   
 
 0.554
asg
L-asparaginase I.
   
 0.536
Lery_0258
Mannose-1-phosphate guanyltransferase.
    
 0.533
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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