STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lery_2201Putative conjugative transfer protein TraB. (488 aa)    
Predicted Functional Partners:
Lery_2195
Putative conjugative transfer protein TrbC.
 
   
 0.936
Lery_2197
Putative conjugative transfer protein TraW.
 
     0.935
Lery_2199
Putative conjugative transfer protein TraC.
 
   
 0.935
Lery_2190
Putative sex pilus assembly and mating pair protein TraG.
 
     0.933
Lery_2191
Putative conjugative transfer protein TraH.
 
     0.933
Lery_2192
Putative conjugative transfer protein TrbB.
 
     0.933
Lery_2193
Putative conjugative transfer protein TraF.
 
     0.933
Lery_2194
Conjugal transfer mating pair stabilization protein TraN.
 
     0.933
Lery_2196
Putative conjugative transfer protein TraU.
 
     0.933
Lery_2188
Conjugative transfer protein TraD.
 
     0.889
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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