Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Lery_2243Hypothetical protein; Belongs to the UPF0149 family. (193 aa)    
Predicted Functional Partners:
Lery_2244
Xaa-Pro aminopeptidase.
 
   
 0.845
ubiH_1
2-octaprenyl-6-methoxyphenol hydroxylase.
 
     0.835
ubiH_2
2-polyprenyl-6-methoxyphenol hydroxylase.
       0.803
zapA
Cell division protein ZapA.
  
  
 0.792
Lery_2247
Outer membrane efflux protein.
 
     0.699
folD
Bifunctional Methylenetetrahydrofolate dehydrogenase/Methenyltetrahydrofolate cyclohydrolase FolD; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
     
  0.683
Lery_2249
ABC transporter ATP-binding protein.
       0.658
Lery_2248
Membrane-fusion protein AcrA.
       0.624
Lery_0747
SCP-2 sterol transfer family protein.
  
     0.607
truD
Hydrogenase; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.
  
     0.593
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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