Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lery_2248Membrane-fusion protein AcrA. (380 aa)    
Predicted Functional Partners:
Lery_2247
Outer membrane efflux protein.
 
  0.975
Lery_2250
ABC transporter permease.
 
 0.975
Lery_2249
ABC transporter ATP-binding protein.
 
  0.937
Lery_1912
Outer membrane efflux protein.
  
 0.775
Lery_0068
Outer membrane protein TolC.
  
 0.758
ubiH_2
2-polyprenyl-6-methoxyphenol hydroxylase.
       0.724
Lery_2748
Putative helicase/relaxase.
 
  
  0.724
Lery_2244
Xaa-Pro aminopeptidase.
       0.722
ubiH_1
2-octaprenyl-6-methoxyphenol hydroxylase.
       0.722
cebC
Chemiosmotic efflux system B protein C.
  
  0.680
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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