Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lery_2257Membrane protein. (345 aa)    
Predicted Functional Partners:
Lery_2258
Pyridine nucleotide-disulfide oxidoreductase.
       0.615
Lery_1935
Hypothetical protein; Belongs to the UPF0145 family.
  
     0.513
Lery_2256
Methyltransferase.
       0.504
egtD
Histidine-specific methyltransferase EgtD.
       0.501
Lery_2336
Hypothetical protein.
  
     0.465
Lery_2175
DEAD/DEAH box helicase.
  
     0.426
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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