Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lery_2299Hypothetical protein. (319 aa)    
Predicted Functional Partners:
Lery_2731
Sulfate transporter.
    
 0.840
apaH
Bis(5'-nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
 0.728
Lery_1668
Polyketide synthase module.
    
 0.647
Lery_0357
Hypothetical protein.
    
  0.630
htpG
Heat shock protein 90; Molecular chaperone. Has ATPase activity.
   
 0.624
arp_1
Ankyrin repeat protein.
   
 0.581
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
   0.539
truD
Hydrogenase; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.
       0.518
Lery_0363
Hypothetical protein.
    
  0.503
Lery_0670
Tyrosine phosphatase II superfamily protein.
    
  0.503
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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