Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Lery_2302Phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family. (288 aa)    
Predicted Functional Partners:
Lery_2303
LphB.
 
  
 0.949
Lery_0344
L-gululonolactone oxidase.
 
  
  0.828
Lery_1668
Polyketide synthase module.
    
 0.783
Lery_0345
Short chain dehydrogenase/reductase family oxidoreductase.
 
    0.775
Lery_2301
Substrate of the Dot/Icm secretion system.
       0.704
idi
Isopentenyl-diphosphate Delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
  
 
 0.699
Lery_2904
Electron transferring flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.695
capD
Nucleoside-diphosphate sugar epimerase.
       0.684
csaA
Chaperonin CsaA.
  
    0.683
ubiD
3-polyprenyl-4-hydroxybenzoate decarboxylase; Belongs to the UbiD family.
    
 0.608
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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