proP6 protein (Legionella erythra) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

proP6

Proline/betaine transporter ProP6. (427 aa)

Predicted Functional Partners:

Lery_2367

0.800

def-2

0.800

Lery_2368

0.788

Lery_1668

0.662

Lery_2366

0.548

Lery_2365

0.523

Lery_2830

0.493

Lery_1945

0.464

Lery_1902

0.416

Lery_0175

0.405

Your Current Organism:

Legionella erythra

NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lery_0175	Lery_1668	Lery_0175	Lery_1668	Hemolysin D.	Polyketide synthase module.	0.452
Lery_0175	proP6	Lery_0175	Lery_2370	Hemolysin D.	Proline/betaine transporter ProP6.	0.405
Lery_1668	Lery_0175	Lery_1668	Lery_0175	Polyketide synthase module.	Hemolysin D.	0.452
Lery_1668	Lery_1902	Lery_1668	Lery_1902	Polyketide synthase module.	Major facilitator family transporter.	0.435
Lery_1668	Lery_1945	Lery_1668	Lery_1945	Polyketide synthase module.	2-acylglycerophosphoethanolamine acyltransferase.	0.996
Lery_1668	def-2	Lery_1668	Lery_2369	Polyketide synthase module.	Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	0.406
Lery_1668	proP6	Lery_1668	Lery_2370	Polyketide synthase module.	Proline/betaine transporter ProP6.	0.662
Lery_1902	Lery_1668	Lery_1902	Lery_1668	Major facilitator family transporter.	Polyketide synthase module.	0.435
Lery_1902	proP6	Lery_1902	Lery_2370	Major facilitator family transporter.	Proline/betaine transporter ProP6.	0.416
Lery_1945	Lery_1668	Lery_1945	Lery_1668	2-acylglycerophosphoethanolamine acyltransferase.	Polyketide synthase module.	0.996
Lery_1945	proP6	Lery_1945	Lery_2370	2-acylglycerophosphoethanolamine acyltransferase.	Proline/betaine transporter ProP6.	0.464
Lery_2365	Lery_2366	Lery_2365	Lery_2366	Prophage regulatory protein-like protein.	Hypothetical protein.	0.752
Lery_2365	Lery_2367	Lery_2365	Lery_2367	Prophage regulatory protein-like protein.	Transcription factor.	0.523
Lery_2365	Lery_2368	Lery_2365	Lery_2368	Prophage regulatory protein-like protein.	Putative FlgJ-like protein.	0.492
Lery_2365	def-2	Lery_2365	Lery_2369	Prophage regulatory protein-like protein.	Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	0.523
Lery_2365	proP6	Lery_2365	Lery_2370	Prophage regulatory protein-like protein.	Proline/betaine transporter ProP6.	0.523
Lery_2366	Lery_2365	Lery_2366	Lery_2365	Hypothetical protein.	Prophage regulatory protein-like protein.	0.752
Lery_2366	Lery_2367	Lery_2366	Lery_2367	Hypothetical protein.	Transcription factor.	0.548
Lery_2366	Lery_2368	Lery_2366	Lery_2368	Hypothetical protein.	Putative FlgJ-like protein.	0.497
Lery_2366	def-2	Lery_2366	Lery_2369	Hypothetical protein.	Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	0.550