STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lery_2412Ribose-phosphate pyrophosphokinase; Belongs to the ribose-phosphate pyrophosphokinase family. (301 aa)    
Predicted Functional Partners:
Lery_2467
2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion.
   
 0.984
Lery_2411
Thymidine phosphorylase.
 
  
 0.960
odpB
Pyruvate dehydrogenase E1 subunit beta.
   
 0.953
sucA
2-oxoglutarate dehydrogenase E1.
    
 0.876
Lery_1610
Thymidine phosphorylase.
 
  
 0.834
Lery_2410
Metallo-beta lactamase family transporter protein.
 
     0.824
Lery_2409
Chemiosmotic efflux system B protein A; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.778
lysU
Lysine tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
 
 0.747
Lery_1070
Branched-chain alpha-keto acid dehydrogenase subunit E2.
   
 0.744
Lery_1519
Putative CoA-dependent acyltransferase.
   
 0.744
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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