STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lery_2484LysM domain-containing protein. (352 aa)    
Predicted Functional Partners:
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
  
 
 
 0.991
Lery_2074
Type IV pilus biogenesis protein PilP.
  
 
   0.940
Lery_2075
Type IV pilus biogenesis protein PilO.
  
 
   0.940
pilN
Tfp pilus assembly protein PilN.
  
 
   0.940
pilM
Tfp pilus assembly protein, ATPase PilM.
  
 
   0.939
dprA
DNA processing enzyme DprA.
       0.800
smg
Protein Smg.
       0.800
pilZ_2
Type 4 fimbrial biogenesis protein PilZ.
  
    0.777
fimV
FimV protein.
  
   
 0.772
Lery_2107
Pre-pilin leader sequence (pilV).
  
     0.762
Your Current Organism:
Legionella erythra
NCBI taxonomy Id: 448
Other names: ATCC 35303, CCUG 29667, CIP 103843, DSM 17644, JCM 7564, L. erythra, NCTC 11977, strain SE-32A-C8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.